lamortenera / epicseg
Chromatin segmentation in R
☆19Updated 7 years ago
Alternatives and similar repositories for epicseg:
Users that are interested in epicseg are comparing it to the libraries listed below
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆24Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- ☆12Updated 3 months ago
- ☆12Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated this week
- Genomic Association Tester☆30Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- R package for Methylation-based Inference of Regulatory Activity☆11Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago