thelovelab / tximportLinks
Transcript quantification import for modular pipelines
☆139Updated 2 weeks ago
Alternatives and similar repositories for tximport
Users that are interested in tximport are comparing it to the libraries listed below
Sorting:
- R package for genomic feature analysis and visualization☆79Updated 3 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 7 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated last year
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- deconstructSigs☆142Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆82Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 years ago
- ATAC-seq snakemake pipeline☆89Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago