thelovelab / tximportLinks
Transcript quantification import for modular pipelines
☆143Updated 3 months ago
Alternatives and similar repositories for tximport
Users that are interested in tximport are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 2 months ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- R package for genomic feature analysis and visualization☆79Updated 8 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- deconstructSigs☆144Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- R package containing useful functions for mutational signature analysis☆87Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 8 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- ☆72Updated 2 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆134Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 7 months ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago