pachterlab / aggregationDE
Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
☆19Updated 7 years ago
Alternatives and similar repositories for aggregationDE:
Users that are interested in aggregationDE are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- interactive plots for differential expression analysis☆32Updated last month
- ☆28Updated 9 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- HOT regions paper☆11Updated 5 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- a set of NGS pipelines☆24Updated this week