Alternatives and similar repositories for Microbiome_notes:

Users that are interested in Microbiome_notes are comparing it to the libraries listed below

• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 weeks ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 5 years ago
• biovcnet / topic-metagenomics
  A repository for the lessons and notebooks used for Binder tutorials
  ☆19Updated 4 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated 3 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 4 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated last year
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• microbiome-resources / Qiime2-Microbiome-workshop
  ☆15Updated 2 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• MG-RAST / MG-RAST
  The MG-RAST Backend -- the API server
  ☆45Updated 2 years ago
• emepyc / Blast2lca
  Calculates the lowest common ancestors of each query sequence in a Blast result
  ☆31Updated 7 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last year
• segalab / SGVFinder
  ☆32Updated last year
• cssmillie / StrainFinder
  StrainFinder
  ☆27Updated 6 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• gavinmdouglas / picrust2_manuscript
  ☆23Updated 4 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated last month
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 4 months ago
• NCBI-Hackathons / MetagenomicAntibioticResistance
  NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes
  ☆20Updated 6 years ago
• farhadm1990 / 16S-rRNA-amplicon
  Analysis of (gut) microbiome in Qiime2 and R.
  ☆19Updated 8 months ago
• BGI-Qingdao / MetaTrass
  Metagenomics Taxonomic Reads Assembly Single-Species
  ☆16Updated last year
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago