Sparse Cooccurence Network Investigation for Compositional data
☆26Aug 11, 2026Updated this week
Alternatives and similar repositories for SCNIC
Users that are interested in SCNIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆28Nov 19, 2025Updated 8 months ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆17Jun 30, 2026Updated last month
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆88Jul 13, 2026Updated 3 weeks ago
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆21Jan 8, 2024Updated 2 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- ☆11Dec 28, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated 3 weeks ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 9 months ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- ☆21Apr 25, 2025Updated last year
- ☆19Dec 16, 2024Updated last year
- Data exploration with multiple machine learning algorithms☆14Nov 28, 2021Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- ☆19Updated this week
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Jul 24, 2026Updated 2 weeks ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- A Qiime plugin for MICOM.☆10Jul 21, 2026Updated 3 weeks ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Maximum Likelihood Amplicon Pipeline☆22Jul 16, 2026Updated 3 weeks ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- ☆20Jul 12, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- Import qiime2 artifacts to R☆184Dec 12, 2024Updated last year
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- ☆12Apr 6, 2021Updated 5 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆36Oct 19, 2020Updated 5 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆96Aug 11, 2025Updated last year