microsud / dysbiosisRLinks
The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
☆15Updated 3 years ago
Alternatives and similar repositories for dysbiosisR
Users that are interested in dysbiosisR are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Linear Decomposition Model☆25Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆20Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Transform files to the microtable object with microeco package☆28Updated last month
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- selbal: selection of balances for microbial signatures☆32Updated 10 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 7 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- R implementation of the LEfSe method☆63Updated last month
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- A modest re-desing update for the classic FastQC report.☆29Updated 3 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated 3 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆123Updated 4 months ago
- ☆42Updated 8 years ago
- Microbiome analysis☆53Updated 2 weeks ago
- functions for analyzing phyloseq data☆28Updated 10 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago