Alternatives and similar repositories for dysbiosisR:

Users that are interested in dysbiosisR are comparing it to the libraries listed below

• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 11 months ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆22Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 3 months ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆51Updated 3 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 months ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last month
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆25Updated 3 months ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 10 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated 4 months ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• Nick243 / Introduction-to-Metagenomics-Summer-Workshop-2019
  Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.
  ☆32Updated 5 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated 11 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆39Updated last month
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆32Updated 4 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated 5 months ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• barakbri / dacomp
  Non parametric differential abundance tests for microbiome data
  ☆9Updated 3 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated this week