mhammell-laboratory / TEtranscriptsLinks
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
☆267Updated last week
Alternatives and similar repositories for TEtranscripts
Users that are interested in TEtranscripts are comparing it to the libraries listed below
Sorting:
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆243Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆284Updated last week
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- Detecting sites of genomic enrichment☆196Updated 2 years ago
- ☆279Updated 3 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆217Updated last week
- Fast and accurate gene fusion detection from RNA-Seq data☆251Updated last month
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆206Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last month
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 3 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆239Updated last week
- ☆157Updated 3 years ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆227Updated 6 months ago
- ASCAT R package☆191Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆172Updated last week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆192Updated last week
- Generate IGV style locus tracks from bigWig files in R☆173Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆180Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆155Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆189Updated 5 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆226Updated last month
- Check strandedness of RNA-Seq fastq files☆127Updated 3 years ago
- Web application to explore the Sequence Read Archive.☆217Updated 3 months ago