mhammell-laboratory / TEtranscriptsLinks
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
☆266Updated last month
Alternatives and similar repositories for TEtranscripts
Users that are interested in TEtranscripts are comparing it to the libraries listed below
Sorting:
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆240Updated this week
- ATAC-seq peak-calling and QC analysis pipeline☆213Updated this week
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- Detecting sites of genomic enrichment☆194Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆225Updated 3 months ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- ☆275Updated 11 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 3 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆206Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆247Updated last month
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated 3 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆171Updated 5 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆219Updated 2 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated 11 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆227Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆178Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆227Updated last month
- ☆141Updated 6 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- ASCAT R package☆189Updated last month
- ☆153Updated 5 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆226Updated 5 months ago
- Full-Length Alternative Isoform analysis of RNA☆237Updated this week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆225Updated last year
- Download FASTQ files from SRA or ENA repositories.☆344Updated 4 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆188Updated last week