mhammell-laboratory / TEtranscriptsLinks
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
☆258Updated 6 months ago
Alternatives and similar repositories for TEtranscripts
Users that are interested in TEtranscripts are comparing it to the libraries listed below
Sorting:
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated 3 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- ATAC-seq peak-calling and QC analysis pipeline☆208Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- parallel fastq-dump wrapper☆299Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- ☆270Updated 9 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- ☆154Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆245Updated this week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆216Updated last week
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆216Updated last month
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆170Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆257Updated 2 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆218Updated last month
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 3 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆233Updated this week
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Generate IGV style locus tracks from bigWig files in R☆167Updated 9 months ago
- Web application to explore the Sequence Read Archive.☆219Updated last month
- ASCAT R package☆186Updated 5 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- Application for making ENCODE Blacklists☆317Updated 4 years ago
- ☆149Updated 3 months ago