Alternatives and similar repositories for pyGenomeTracks

Users that are interested in pyGenomeTracks are comparing it to the libraries listed below

• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆751Updated 5 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated 6 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆440Updated 5 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆536Updated 4 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆395Updated 3 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆593Updated last year
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆492Updated this week
• aidenlab / juicer
  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
  ☆473Updated 4 months ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆629Updated 2 months ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆521Updated 4 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆349Updated last month
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆442Updated last year
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆430Updated last year
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆765Updated last month
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆555Updated 5 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆529Updated last week
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆450Updated last year
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆564Updated this week
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆550Updated 3 weeks ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆683Updated 6 months ago
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆405Updated 3 months ago
• hbctraining / DGE_workshop
  ☆406Updated 3 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,040Updated 2 weeks ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆455Updated last year
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆822Updated 5 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆488Updated 7 months ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆351Updated 3 weeks ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆885Updated 2 weeks ago