deeptools / pyGenomeTracksLinks
python module to plot beautiful and highly customizable genome browser tracks
☆835Updated last year
Alternatives and similar repositories for pyGenomeTracks
Users that are interested in pyGenomeTracks are comparing it to the libraries listed below
Sorting:
- Tools to process and analyze deep sequencing data.☆734Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆517Updated last month
- Bioinformatics one liners from Ming Tang☆490Updated 4 years ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆398Updated 2 weeks ago
- Performant Pythonic GenomicRanges☆483Updated 5 months ago
- A tool to find sequencing data and metadata from public databases.☆584Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆523Updated 5 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated 3 weeks ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆431Updated 2 weeks ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆468Updated this week
- ENCODE ATAC-seq pipeline☆427Updated last year
- ☆394Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆418Updated last year
- A collection of tools for Hi-C data analysis☆604Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆338Updated 2 months ago
- ☆443Updated 5 years ago
- genes and genomes at your fingertips☆398Updated 3 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆509Updated 9 months ago
- A quality control analysis tool for high throughput sequencing data☆526Updated 2 weeks ago
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆474Updated 3 months ago
- Phylogenetic orthology inference for comparative genomics☆789Updated last month
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆456Updated 9 months ago
- Near-optimal RNA-Seq quantification☆696Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆522Updated 3 weeks ago
- A list of interesting genome browser and genome visualization programs☆999Updated 2 weeks ago
- Bioinformatics code libraries and scripts☆542Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆448Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago