Alternatives and similar repositories for pyGenomeTracks

Users that are interested in pyGenomeTracks are comparing it to the libraries listed below

• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆751Updated 6 months ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated 2 weeks ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated 2 weeks ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆493Updated last week
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆442Updated 6 months ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆446Updated last year
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆768Updated last week
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆429Updated last year
• hbctraining / DGE_workshop
  ☆408Updated 4 years ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆593Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆697Updated 7 months ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆525Updated last week
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆537Updated 2 weeks ago
• s-andrews / FastQC
  A quality control analysis tool for high throughput sequencing data
  ☆578Updated last month
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆406Updated 4 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆482Updated 5 months ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆630Updated last week
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆829Updated 6 months ago
• aidenlab / juicer
  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
  ☆474Updated 5 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆348Updated last month
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆320Updated 3 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆444Updated 5 years ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆455Updated last year
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆555Updated 6 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆491Updated 8 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆887Updated last month
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆541Updated this week
• cmdcolin / awesome-genome-visualization
  A list of interesting genome browser and genome visualization programs
  ☆1,045Updated 2 weeks ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆633Updated last month