deeptools / pyGenomeTracksLinks
python module to plot beautiful and highly customizable genome browser tracks
☆851Updated last year
Alternatives and similar repositories for pyGenomeTracks
Users that are interested in pyGenomeTracks are comparing it to the libraries listed below
Sorting:
- Tools to process and analyze deep sequencing data.☆746Updated 4 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆531Updated 4 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆762Updated last week
- Bioinformatics one liners from Ming Tang☆498Updated 5 years ago
- Performant Pythonic GenomicRanges☆491Updated last month
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆438Updated 3 months ago
- A tool to find sequencing data and metadata from public databases.☆591Updated last year
- genes and genomes at your fingertips☆404Updated 2 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆428Updated last year
- RNA-seq workflow using STAR and DESeq2☆348Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆486Updated 6 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆346Updated 2 weeks ago
- ☆442Updated 5 years ago
- ENCODE ATAC-seq pipeline☆436Updated last year
- A collection of tools for Hi-C data analysis☆626Updated last month
- Bioinformatics code libraries and scripts☆551Updated 4 months ago
- ☆402Updated 3 years ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆469Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆505Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆445Updated 11 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆533Updated 3 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆520Updated 2 months ago
- Intro to ChIPseq using HPC☆317Updated 2 years ago
- A list of interesting genome browser and genome visualization programs☆1,032Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆677Updated 5 months ago
- A quality control analysis tool for high throughput sequencing data☆557Updated last week
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆543Updated 2 months ago
- GTEx & TOPMed data production and analysis pipelines☆390Updated 2 months ago
- ENCODE ChIP-seq pipeline☆275Updated last year