deeptools / pyGenomeTracksLinks
python module to plot beautiful and highly customizable genome browser tracks
☆862Updated last year
Alternatives and similar repositories for pyGenomeTracks
Users that are interested in pyGenomeTracks are comparing it to the libraries listed below
Sorting:
- Tools to process and analyze deep sequencing data.☆751Updated 6 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆442Updated 5 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆396Updated 2 weeks ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆535Updated last week
- A tool to find sequencing data and metadata from public databases.☆593Updated last year
- Bioinformatics one liners from Ming Tang☆500Updated 5 years ago
- Performant Pythonic GenomicRanges☆493Updated last week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆537Updated 2 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated last week
- Collections of library structure and sequence of popular single cell genomic methods☆491Updated 8 months ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆474Updated 5 months ago
- A collection of tools for Hi-C data analysis☆630Updated last week
- genes and genomes at your fingertips☆406Updated 4 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆525Updated last week
- ENCODE ATAC-seq pipeline☆445Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆455Updated last year
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆429Updated last year
- ☆443Updated 5 years ago
- RNA-seq workflow using STAR and DESeq2☆351Updated last month
- 10x Genomics Single Cell Analysis☆443Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- A list of interesting genome browser and genome visualization programs☆1,045Updated last week
- Fast genome-wide functional annotation through orthology assignment☆697Updated 7 months ago
- ☆406Updated 4 years ago
- A quality control analysis tool for high throughput sequencing data☆578Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆541Updated this week
- Intro to ChIPseq using HPC☆320Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆484Updated last month
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆460Updated last year
- GTEx & TOPMed data production and analysis pipelines☆394Updated 4 months ago