loosolab / TOBIASLinks
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆237Updated last month
Alternatives and similar repositories for TOBIAS
Users that are interested in TOBIAS are comparing it to the libraries listed below
Sorting:
- ATAC-seq peak-calling and QC analysis pipeline☆221Updated last month
- Application for making ENCODE Blacklists☆332Updated 4 years ago
- ☆145Updated 7 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Updated 6 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆288Updated last year
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- ☆102Updated 3 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated 3 weeks ago
- my notes for scATACseq analysis☆133Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- ENCODE ChIP-seq pipeline☆278Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆299Updated 2 years ago
- Step-by-step analysis pipeline for RNA-seq data☆161Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆216Updated last year
- Analysis pipeline for ATAC-seq data☆83Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- ☆286Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆275Updated 2 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Clustering scRNAseq by genotypes☆192Updated 2 months ago
- Intro to ChIPseq using HPC☆320Updated 2 years ago
- Single-Cell Genotyping Tool☆215Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆307Updated 3 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆229Updated last month
- ☆114Updated last year
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆173Updated last week
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆207Updated 7 years ago
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year