loosolab / TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆209Updated 2 months ago
Alternatives and similar repositories for TOBIAS:
Users that are interested in TOBIAS are comparing it to the libraries listed below
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- Application for making ENCODE Blacklists☆295Updated 3 years ago
- Detecting sites of genomic enrichment☆190Updated last year
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- ☆129Updated 6 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- ☆88Updated last month
- my notes for scATACseq analysis☆122Updated 11 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆264Updated last year
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆183Updated 2 months ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆278Updated 8 months ago
- ☆147Updated 2 years ago
- ☆105Updated 11 months ago
- Intro to ChIPseq using HPC☆300Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆278Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- Analysis Pipeline for Single Cell ATAC-seq☆314Updated last year
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆89Updated last month
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆239Updated 3 months ago
- TCR and BCR assembly from RNA-seq data☆298Updated last week
- ☆118Updated 6 years ago
- Clustering scRNAseq by genotypes☆175Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year