loosolab / TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆195Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for TOBIAS
- Application for making ENCODE Blacklists☆268Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆187Updated 3 weeks ago
- Detecting sites of genomic enrichment☆187Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆102Updated last year
- ☆120Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆97Updated last year
- A short tutorial on how to use RSEM☆133Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆139Updated last week
- my notes for scATACseq analysis☆116Updated 6 months ago
- A tool for detecting somatic variants in single cell data☆167Updated last month
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- ☆79Updated 4 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆135Updated last year
- ☆141Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆224Updated 2 weeks ago
- chromatin Variability Across Regions (of the genome!)☆158Updated 3 months ago
- ☆100Updated 6 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆174Updated 3 weeks ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆131Updated 2 years ago
- Introduction to bulk RNA-seq☆94Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆114Updated 2 years ago
- ☆118Updated 6 years ago
- Intro to ChIPseq using HPC☆287Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆277Updated last year
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆133Updated last week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆80Updated 3 weeks ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆275Updated 3 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆257Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆233Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆198Updated this week