Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆250Jun 9, 2026Updated last month
Alternatives and similar repositories for TOBIAS
Users that are interested in TOBIAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆114Nov 3, 2025Updated 8 months ago
- Detecting sites of genomic enrichment☆202May 8, 2023Updated 3 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆895Jul 10, 2024Updated 2 years ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Jun 30, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- binned motif enrichment analysis and visualisation☆48Jun 13, 2026Updated last month
- ENCODE ATAC-seq pipeline☆455Jul 18, 2024Updated 2 years ago
- Application for making ENCODE Blacklists☆344Apr 23, 2021Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆129Jun 19, 2026Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆781Jul 7, 2026Updated 2 weeks ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆192May 1, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆287May 11, 2026Updated 2 months ago
- A collection of tools for Hi-C data analysis☆648Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆461Feb 18, 2025Updated last year
- Basic workflow for ATAC-seq analysis☆96Feb 23, 2024Updated 2 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆181Mar 19, 2026Updated 4 months ago
- ☆75May 27, 2026Updated last month
- nucleosome calling using ATAC-seq☆112Dec 20, 2020Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆37Jul 5, 2021Updated 5 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆241Jun 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Statistically Significant loops from HiChIP data☆47Apr 17, 2024Updated 2 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Generate IGV style locus tracks from bigWig files in R☆189Oct 28, 2024Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Intro to ChIPseq using HPC☆324Jan 30, 2023Updated 3 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆83Jan 24, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆762Updated this week
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 5 months ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 3 months ago
- Universal RObust Peak Annotator☆16Dec 19, 2023Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆134Feb 3, 2026Updated 5 months ago