loosolab / TOBIAS
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆198Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for TOBIAS
- Application for making ENCODE Blacklists☆273Updated 3 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆188Updated this week
- ☆120Updated 5 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆99Updated 2 years ago
- ☆80Updated 4 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- Detecting sites of genomic enrichment☆187Updated last year
- ☆141Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆132Updated 2 years ago
- ☆102Updated 7 months ago
- Intro to ChIPseq using HPC☆289Updated last year
- Generate IGV style locus tracks from bigWig files in R☆141Updated 3 weeks ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆228Updated last month
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆175Updated last month
- my notes for scATACseq analysis☆119Updated 7 months ago
- zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs☆275Updated 4 months ago
- Introduction to bulk RNA-seq☆95Updated 2 months ago
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆259Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆208Updated 5 months ago
- ☆118Updated 6 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆233Updated last month
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- parallel fastq-dump wrapper☆283Updated last year
- Analysis Pipeline for Single Cell ATAC-seq☆307Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆259Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆137Updated last year
- Cell types enrichment analysis☆185Updated 5 months ago