Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
☆241Mar 17, 2026Updated this week
Alternatives and similar repositories for TOBIAS
Users that are interested in TOBIAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Nov 3, 2025Updated 4 months ago
- Detecting sites of genomic enrichment☆199May 8, 2023Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- HMMRATAC peak caller for ATAC-seq data☆98Nov 12, 2024Updated last year
- binned motif enrichment analysis and visualisation☆45Jan 27, 2026Updated last month
- ENCODE ATAC-seq pipeline☆448Jul 18, 2024Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆126Mar 6, 2026Updated 2 weeks ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago
- Application for making ENCODE Blacklists☆334Apr 23, 2021Updated 4 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆767Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆448Feb 18, 2025Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Nov 6, 2025Updated 4 months ago
- nucleosome calling using ATAC-seq☆110Dec 20, 2020Updated 5 years ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆177Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Jul 5, 2021Updated 4 years ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- Basic workflow for ATAC-seq analysis☆95Feb 23, 2024Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- ☆17Jan 3, 2019Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Generate IGV style locus tracks from bigWig files in R☆183Oct 28, 2024Updated last year
- Intro to ChIPseq using HPC☆321Jan 30, 2023Updated 3 years ago
- Tools to process and analyze deep sequencing data.☆752Jul 23, 2025Updated 8 months ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- ☆21Dec 10, 2025Updated 3 months ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆97Jan 30, 2026Updated last month
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- Universal RObust Peak Annotator☆16Dec 19, 2023Updated 2 years ago
- Multiome GRN inference.☆133Apr 19, 2024Updated last year
- ☆60Feb 9, 2026Updated last month
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆431Mar 28, 2024Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆215Updated this week
- Extract 3D contacts (.pairs) from sequencing alignments☆128Feb 3, 2026Updated last month