A package for quantifying transposable elements at a locus level for RNAseq datasets.
☆32May 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for TElocal
Users that are interested in TElocal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for Quantifying Interspersed Repeat Expression☆67Jun 20, 2022Updated 3 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆284May 11, 2026Updated 3 weeks ago
- Estimate locus specific human LINE-1 expression.☆40Jan 19, 2026Updated 4 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆93Jan 26, 2023Updated 3 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆36Jan 6, 2025Updated last year
- Dfam Transposable Element Tools Docker container.☆105May 5, 2026Updated last month
- ☆120Apr 24, 2024Updated 2 years ago
- ☆13Sep 8, 2020Updated 5 years ago
- ☆25Jun 27, 2023Updated 2 years ago
- Analysis of sequencing error profile for long read data.☆13Mar 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quantification of transposable element expression using RNA-seq☆91Feb 8, 2024Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆25May 30, 2023Updated 3 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆11Dec 15, 2023Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated last month
- FamDB file format library and utilities☆41Jun 1, 2026Updated last week
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- Deconvolution of RNA Alternative COnformations☆15Updated this week
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆12Mar 7, 2024Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Nov 24, 2025Updated 6 months ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- ☆12Mar 20, 2021Updated 5 years ago
- A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-…☆37Nov 25, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113May 19, 2026Updated 3 weeks ago
- ☆28Sep 9, 2025Updated 9 months ago
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Unsorted scripts for bioinformatics☆64Jul 1, 2021Updated 4 years ago