mhammell-laboratory / TElocal
A package for quantifying transposable elements at a locus level for RNAseq datasets.
☆25Updated 2 months ago
Alternatives and similar repositories for TElocal:
Users that are interested in TElocal are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Tutorial Website☆57Updated 4 years ago
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆46Updated 2 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 8 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆60Updated 8 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- ☆56Updated 3 years ago
- ☆27Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 6 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆108Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated 2 weeks ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- 4C-seq processing pipeline☆23Updated 3 weeks ago
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- ☆43Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3