Reference-guided transcript discovery and quantification for long read RNA-Seq data
☆238Apr 28, 2026Updated this week
Alternatives and similar repositories for bambu
Users that are interested in bambu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆220Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆158Jan 25, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆262Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆68Jan 19, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Full-Length Alternative Isoform analysis of RNA☆251Apr 21, 2026Updated last week
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆164Nov 7, 2024Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆18Apr 20, 2026Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆181Apr 12, 2023Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆156Jan 23, 2026Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆128Apr 10, 2026Updated 2 weeks ago
- ☆64Mar 19, 2026Updated last month
- Long-read Isoform Quantification and Analysis☆39Mar 25, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 11 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- cDNA read preprocessing☆90Jul 25, 2024Updated last year
- Visualizing transcript structure and annotation using ggplot2☆167Aug 24, 2024Updated last year
- SingleCell Nanopore sequencing data analysis☆65May 30, 2025Updated 11 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆225Nov 20, 2025Updated 5 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Apr 21, 2026Updated last week
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- long read RNA-seq quantification☆109Mar 16, 2026Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆270Mar 15, 2026Updated last month
- Estimation of Promoter Activity from RNA-Seq data☆57Jul 14, 2025Updated 9 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆508Dec 26, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆35Mar 17, 2026Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆79Mar 21, 2023Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆150Apr 17, 2026Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆236Jul 9, 2025Updated 9 months ago
- ☆31Nov 28, 2024Updated last year
- ☆295Mar 4, 2026Updated last month
- ☆111Nov 24, 2025Updated 5 months ago