Tools to process and analyze deep sequencing data.
☆762Aug 7, 2026Updated this week
Alternatives and similar repositories for deepTools
Users that are interested in deepTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python module to plot beautiful and highly customizable genome browser tracks☆894Jul 10, 2024Updated 2 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆782Jul 7, 2026Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,483Aug 2, 2026Updated last week
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,410Jul 30, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bedtools - the swiss army knife for genome arithmetic☆1,045Jun 10, 2026Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆407Updated this week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆275Jul 17, 2025Updated last year
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- A python extension for quick access to bigWig and bigBed files☆249Jul 22, 2026Updated 2 weeks ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 6 months ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆443Mar 28, 2024Updated 2 years ago
- RNA-seq aligner☆2,229Mar 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BEDOPS: high-performance genomic feature operations