FelixKrueger / SNPsplitLinks
Allele-specific alignment sorting
☆58Updated 2 years ago
Alternatives and similar repositories for SNPsplit
Users that are interested in SNPsplit are comparing it to the libraries listed below
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated 11 months ago
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆58Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 5 months ago
- ENCODE long read RNA-seq pipeline☆49Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- ☆44Updated 2 years ago
- 4C-seq processing pipeline☆23Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- ☆61Updated 11 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆114Updated last week
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- HiC uniform processing pipeline☆60Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago