FelixKrueger / SNPsplitLinks
Allele-specific alignment sorting
☆61Updated 3 years ago
Alternatives and similar repositories for SNPsplit
Users that are interested in SNPsplit are comparing it to the libraries listed below
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆67Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆116Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ☆49Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆66Updated 7 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated last week
- Publication quality NGS track plotting☆117Updated 4 months ago
- HiC uniform processing pipeline☆63Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆64Updated 4 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 7 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆119Updated 7 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- Tools for analyzing DNA methylation data☆44Updated last month
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Extract 3D contacts (.pairs) from sequencing alignments☆124Updated last week
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆75Updated 3 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆111Updated 2 months ago
- Package for analysis and characterization of differential TADs☆26Updated 3 years ago