FelixKrueger / SNPsplitLinks
Allele-specific alignment sorting
☆59Updated 2 years ago
Alternatives and similar repositories for SNPsplit
Users that are interested in SNPsplit are comparing it to the libraries listed below
Sorting:
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆112Updated 4 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 3 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 3 years ago
- ☆63Updated 3 weeks ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- ☆59Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆46Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- release version☆54Updated 3 years ago
- HiC uniform processing pipeline☆61Updated last year
- Quantification of transposable element expression using RNA-seq☆77Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- 4C-seq processing pipeline☆25Updated 6 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago