Quantification of transposable element expression using RNA-seq
☆92Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for telescope
Users that are interested in telescope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for Quantifying Interspersed Repeat Expression☆68Jun 20, 2022Updated 4 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆94Jan 26, 2023Updated 3 years ago
- Transposable element databases☆17Apr 7, 2022Updated 4 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆289Updated this week
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transposable Element Finder - Detection of active transposable elements from NGS data☆10Apr 14, 2026Updated 4 months ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆42Jan 19, 2026Updated 6 months ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- ☆120Apr 24, 2024Updated 2 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆127Apr 17, 2026Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 8 months ago
- ☆67Mar 19, 2026Updated 4 months ago
- ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed…☆26Sep 28, 2021Updated 4 years ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆25Oct 28, 2025Updated 9 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆30May 5, 2023Updated 3 years ago
- ☆15Aug 25, 2022Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆106Jun 11, 2026Updated 2 months ago
- Snakemake pipeline to analyze transposable element 'omics data.☆33Aug 3, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Earl Grey: A fully automated TE curation and annotation pipeline☆221Updated this week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 16, 2026Updated 3 weeks ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Nov 15, 2020Updated 5 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆33May 11, 2026Updated 3 months ago
- FamDB file format library and utilities☆49Jun 1, 2026Updated 2 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 4 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43May 11, 2017Updated 9 years ago