ababaian / LIONSLinks
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
☆30Updated 5 years ago
Alternatives and similar repositories for LIONS
Users that are interested in LIONS are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- ☆34Updated 2 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Micro DNA identification☆23Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- ☆13Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- ☆24Updated last year
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 3 weeks ago
- isoCirc☆10Updated 2 years ago
- ☆38Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- QC report generator for Hi-C pairs file☆13Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆22Updated 5 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- ☆37Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago