ababaian / LIONSLinks
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
☆30Updated 4 years ago
Alternatives and similar repositories for LIONS
Users that are interested in LIONS are comparing it to the libraries listed below
Sorting:
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆23Updated 4 years ago
- ☆34Updated 3 weeks ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- ☆38Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆22Updated last year
- ☆13Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- ☆24Updated 11 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- ☆23Updated 4 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆22Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated this week
- isoCirc☆10Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ☆20Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- GENome Organisation Visual Analytics☆15Updated 3 years ago