ababaian / LIONS
LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
☆27Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for LIONS
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- ☆23Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- RNA editing tests☆16Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- ☆17Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆20Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆16Updated 3 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆27Updated 4 months ago
- Micro DNA identification☆22Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- ☆35Updated 5 years ago
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- Long read to rMATS☆31Updated last year
- ☆15Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- ☆21Updated 2 weeks ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- ☆20Updated 4 years ago
- Genomic Association Tester☆29Updated last year