LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a paired-end RNAseq library to detect TE-intiated transcripts
☆30Dec 28, 2020Updated 5 years ago
Alternatives and similar repositories for LIONS
Users that are interested in LIONS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 29, 2020Updated 6 years ago
- Pipeline for the analysis of PE ChIP-seq data☆15Jul 20, 2020Updated 6 years ago
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software for Quantifying Interspersed Repeat Expression☆68Jun 20, 2022Updated 4 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 3 months ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆126Apr 17, 2026Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆41Jan 19, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- ☆13May 27, 2025Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆94Jan 26, 2023Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆287May 11, 2026Updated 2 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- DTU analysis tool inspired by llamas☆12May 22, 2026Updated last month
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆12Mar 19, 2026Updated 4 months ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxfo…☆21May 3, 2019Updated 7 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated this week
- create, manage, and upload track hubs for use in the UCSC genome browser☆56Apr 20, 2024Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Handy list of network visualisation libraries for R☆12Nov 11, 2019Updated 6 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago