Alternatives and similar repositories for ChimeraTE

Users that are interested in ChimeraTE are comparing it to the libraries listed below

• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆45Updated 4 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆55Updated last year
• epi2me-labs / wf-pore-c
  ☆47Updated 2 weeks ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 7 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• srbehera / DRAGEN_Analysis
  ☆36Updated last year
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated last month
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated 11 months ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆29Updated last month
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆58Updated 2 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆69Updated 2 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆20Updated last year
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 8 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• yywan0913 / SVhawkeye
  ☆32Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 8 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆50Updated 8 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• nanoporetech / Pore-C-Snakemake
  ☆34Updated 2 years ago