Alternatives and similar repositories for NHC

Users that are interested in NHC are comparing it to the libraries listed below

• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• talkowski-lab / rCNV2
  Aggregation and analyses of rare CNVs across diseases
  ☆14Updated 2 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 3 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆17Updated this week
• jmacdon / LDblocks_GRCh38
  ☆10Updated 9 months ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• lkuchenb / MultiHLA
  WES HLA Typing based on multiple alternative tools
  ☆17Updated 4 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated 2 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆16Updated 8 months ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆15Updated 7 months ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 11 months ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆43Updated 3 years ago
• KarchinLab / SCHISM
  Subclonal Hierarchy Inference from Somatic Mutations
  ☆21Updated 4 months ago
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated this week
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated 3 weeks ago
• zd105 / AllEnricher
  A comprehensive gene set function enrichment tool for multiple species.
  ☆13Updated 5 years ago
• Nealelab / ukb_common
  ☆11Updated last year
• PalamaraLab / FastSMC
  FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…
  ☆14Updated 3 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated 4 months ago
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆29Updated 2 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 9 months ago