casanova-lab / NHC
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
☆10Updated last year
Alternatives and similar repositories for NHC:
Users that are interested in NHC are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- GWAS and rare variants tests at high speed using regenie☆13Updated 4 months ago
- Bedfile perturbation tool☆17Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- Code for EpiMap data browser☆14Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Transcriptome-wide network☆16Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 9 months ago
- ☆12Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Toolkit for calling and analyzing de novo STR mutations☆13Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 2 years ago
- ☆21Updated 3 weeks ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆23Updated 3 years ago