An efficient tool for cross-population fixation index estimation on variant call format files
☆11Mar 1, 2026Updated 5 months ago
Alternatives and similar repositories for FSTest
Users that are interested in FSTest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 3 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 5 months ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 7 months ago
- Parse Copy Number Variation from Array and Sequencing☆19Dec 1, 2023Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 5 months ago
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Recomb-Mix: a local ancestry inference tool☆17Updated this week
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Aug 3, 2026Updated last week
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Feb 27, 2025Updated last year
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆19Jul 14, 2026Updated 3 weeks ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 6 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- Genotyping of paralog specific gene types☆22Nov 6, 2025Updated 9 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆22Mar 2, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated last month
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- Documentation for the Helium pedigree visualization software☆17Apr 3, 2024Updated 2 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- ☆32Mar 3, 2026Updated 5 months ago
- Stochastic-Lanczos-Expedited Mixed Models☆10Dec 10, 2025Updated 8 months ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated last year
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆36Jun 17, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 9 months ago
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 3 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆45Apr 28, 2026Updated 3 months ago
- From metagenomes to epitopes and beyond☆12Jul 27, 2026Updated 2 weeks ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago