mccoy-lab / MAGE
Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.
☆36Updated 6 months ago
Alternatives and similar repositories for MAGE:
Users that are interested in MAGE are comparing it to the libraries listed below
- Enhanced version of the FastQTL QTL mapper☆61Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- ☆35Updated 5 years ago
- 4C-seq processing pipeline☆22Updated 9 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 years ago
- Tutorial Website☆55Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- IDR☆31Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated last week
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆19Updated 3 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last month
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated 2 weeks ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated last month
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Micro DNA identification☆22Updated 3 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 6 months ago
- RNA editing tests☆16Updated 4 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆24Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 4 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 5 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 3 weeks ago
- ☆21Updated 10 months ago