Alternatives and similar repositories for MAGE:

Users that are interested in MAGE are comparing it to the libraries listed below

• kundajelab / idr
  IDR
  ☆31Updated last year
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆38Updated 3 years ago
• PulverCyril / craTEs
  Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
  ☆10Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• mortazavilab / cerberus
  ☆16Updated 7 months ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 years ago
• weng-lab / ENCODE-cCREs
  Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements
  ☆21Updated 2 months ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆46Updated 5 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆12Updated 7 months ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆27Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆56Updated 4 years ago
• dixonlab / hic_breakfinder
  ☆36Updated 5 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆28Updated 3 months ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 2 years ago
• nloyfer / UXM_deconv
  ☆40Updated 2 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆22Updated last month
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• rhysnewell / ChIP-R
  Assessing the reproducibility of proccessed ChIP-seq peaks
  ☆12Updated 3 years ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆35Updated 2 months ago
• BioinfoUNIBA / REDItools2
  ☆54Updated 3 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆56Updated 2 months ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆20Updated last year
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆34Updated 3 months ago