mccoy-lab / MAGELinks
Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.
☆42Updated last year
Alternatives and similar repositories for MAGE
Users that are interested in MAGE are comparing it to the libraries listed below
Sorting:
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆32Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆49Updated 6 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆25Updated last year
- ☆38Updated 2 years ago
- ☆34Updated 3 weeks ago
- ☆24Updated 11 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆37Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- IDR☆31Updated 2 years ago
- Genomic Association Tester☆34Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 3 years ago
- ☆63Updated 2 months ago
- Reconstruction of focal amplifications with long reads☆23Updated last month
- Benchmarking long-read RNA-seq analysis tools☆27Updated 9 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Micro DNA identification☆24Updated 4 years ago
- ☆18Updated last year
- Cross-population fine-mapping☆40Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated this week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 9 months ago
- Improving gene isoform quantification with miniQuant☆29Updated 2 months ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year