mccoy-lab / MAGELinks
Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.
☆42Updated last year
Alternatives and similar repositories for MAGE
Users that are interested in MAGE are comparing it to the libraries listed below
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 5 months ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- ☆37Updated 6 years ago
- ☆23Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆34Updated last month
- ☆24Updated last year
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- ☆38Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆32Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Micro DNA identification☆24Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 4 months ago
- ☆27Updated 3 years ago
- ☆13Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 8 months ago