Alternatives and similar repositories for Lecture-Notes-in-Population-Genetics

Users that are interested in Lecture-Notes-in-Population-Genetics are comparing it to the libraries listed below

• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆87Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Updated 6 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 4 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆46Updated last year
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 3 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆69Updated 2 months ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆57Updated 6 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 11 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 4 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 3 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated last year
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated 2 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆45Updated last year
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆48Updated this week
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆28Updated 7 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆46Updated 11 months ago
• harvardinformatics / TranscriptomeAssemblyTools
  A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…
  ☆51Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆53Updated 7 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆71Updated 5 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆76Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆34Updated 5 years ago
• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆25Updated 5 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 7 years ago