Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
☆21Nov 8, 2024Updated last year
Alternatives and similar repositories for SARS2-mut-fitness
Users that are interested in SARS2-mut-fitness are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARS-CoV-2 RBD antibody escape calculator☆13Nov 19, 2024Updated last year
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Oct 14, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆16May 12, 2023Updated 3 years ago
- Detecting recombination of viral lineages☆10Dec 23, 2025Updated 5 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆73Oct 11, 2023Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- Visualization tool for genetic reassortment☆21Apr 29, 2026Updated last month
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- Exploring COVID-19 data☆18Mar 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Infer the age of ancestral nodes in a tree sequence.☆27Apr 4, 2026Updated 2 months ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 6 months ago
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 8 months ago
- Fine-tuning Boltz-1 for domain knowledge adaption☆27Apr 29, 2025Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 11 years ago
- Fast inference for Generalised Linear Mixed Models.☆14Jan 17, 2025Updated last year
- ☆12May 12, 2019Updated 7 years ago
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 10 months ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated last month
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Results from a model of global SARS-CoV-2 lineage competition☆40Dec 17, 2025Updated 6 months ago
- ☆18Jun 11, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 2 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- PyTorch/PyG implementation of M3GNet☆11Sep 11, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HyPhy: Hypothesis testing using Phylogenies☆264Jun 8, 2026Updated last week
- ☆34Jan 14, 2026Updated 5 months ago
- ☆12Aug 26, 2024Updated last year
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jun 8, 2026Updated last week
- Fast pairwise sequence alignment using SeqAn, in Python.☆13Mar 23, 2019Updated 7 years ago
- This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events in animals.☆17Jun 3, 2025Updated last year
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago