kr-colab / popvaeLinks
genotype dimensionality reduction with a VAE
☆48Updated 11 months ago
Alternatives and similar repositories for popvae
Users that are interested in popvae are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- deep learning prediction of geographic location from individual genome sequences☆52Updated last year
- ☆46Updated 10 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆44Updated 6 months ago
- machine learning applications for dadi☆17Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- ☆66Updated 3 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Updated 3 weeks ago
- Analysis of inference methods on standard population models☆25Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- ☆20Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Sweep Inference Framework (controlling for correlation)☆28Updated last year
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆48Updated 3 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- Reference genome quality scores☆20Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- Implementation of the multiple sequential markovian coalescent☆90Updated 6 months ago
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago