kr-colab / popvaeLinks
genotype dimensionality reduction with a VAE
☆48Updated 9 months ago
Alternatives and similar repositories for popvae
Users that are interested in popvae are comparing it to the libraries listed below
Sorting:
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 4 months ago
- ☆44Updated 8 months ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- deep learning prediction of geographic location from individual genome sequences☆51Updated 10 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆45Updated last month
- Hitting associations with k-mers☆44Updated 3 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- ☆65Updated 3 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- machine learning applications for dadi☆16Updated 10 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆53Updated 8 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Reference genome quality scores☆21Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year