mdozmorov / Immuno_notes

Related projects ⓘ

Alternatives and complementary repositories for Immuno_notes

• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆75Updated last year
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 6 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• liulab-dfci / RIMA_pipeline
  ☆73Updated 9 months ago
• PierreBSC / Viral-Track
  ☆56Updated 4 years ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆72Updated 4 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆43Updated 4 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆93Updated last year
• mhorlbeck / ScreenProcessing
  ☆64Updated last year
• cssmillie / ulcerative_colitis
  ☆59Updated 4 years ago
• rpolicastro / scProportionTest
  ☆59Updated last year
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆68Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆88Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated 3 weeks ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆101Updated 3 months ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆48Updated last year
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆72Updated 6 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆65Updated 4 years ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆30Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆84Updated 4 months ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• Coolgenome / iTALK
  ☆57Updated 5 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆51Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• elimereu / matchSCore2
  ☆53Updated 3 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated last year
• BernsteinLab / aml2019
  The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …
  ☆36Updated 4 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆31Updated 5 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆66Updated 5 months ago