Alternatives and similar repositories for MarcoPolo

Users that are interested in MarcoPolo are comparing it to the libraries listed below

• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 6 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 4 months ago
• UPSUTER / GEMLI
  ☆32Updated 11 months ago
• gxiaolab / scAllele
  ☆39Updated 4 months ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 3 weeks ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 3 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 4 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 4 years ago
• molgenis / scRNA-seq
  ☆18Updated last year
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 5 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆44Updated 3 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆21Updated 5 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆18Updated 4 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago