karissawhiting / cbioportalRLinks
R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
☆22Updated 7 months ago
Alternatives and similar repositories for cbioportalR
Users that are interested in cbioportalR are comparing it to the libraries listed below
Sorting:
- Gene-level general linear mixed model☆21Updated 5 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 6 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 3 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Core utilities for single-cell RNA-seq☆12Updated 2 months ago
- Take command of your set enrichment analyses.☆21Updated this week
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- ☆10Updated 2 years ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- ☆24Updated 3 weeks ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated last month
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- BioCarta pathway images☆11Updated last year
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆26Updated 2 years ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆11Updated last year
- An R package to plot interactive three-way differential expression analysis☆37Updated last year
- Package to wrangle and visualize genomic data in R☆26Updated 8 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Use batch balanced KNN (BBKNN) in R☆10Updated 3 weeks ago
- ☆13Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆18Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Automatic selection of number of principal components☆16Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated 6 months ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Updated 2 years ago