icbi-lab / quanTIseqLinks
a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data
☆18Updated 4 years ago
Alternatives and similar repositories for quanTIseq
Users that are interested in quanTIseq are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- ☆40Updated 5 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- Single-cell Case Control Analysis☆52Updated last week
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- ☆12Updated 6 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 7 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆19Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- ☆48Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- Marker gene selection from scRNA-seq data☆16Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 3 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Updated 4 years ago
- ☆41Updated 7 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago