dswatson / bioplotrView external linksLinks
Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines
☆14Mar 1, 2023Updated 2 years ago
Alternatives and similar repositories for bioplotr
Users that are interested in bioplotr are comparing it to the libraries listed below
Sorting:
- R package for the identification of functionally important subnetworks☆14May 6, 2024Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- ☆17Dec 15, 2017Updated 8 years ago
- ☆18Jul 30, 2022Updated 3 years ago
- ☆18Feb 6, 2026Updated last week
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 8 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Aug 20, 2024Updated last year
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Jan 4, 2024Updated 2 years ago
- Co-expression network management based on WGCNA + k-means☆21May 11, 2021Updated 4 years ago
- ☆19Feb 23, 2022Updated 3 years ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆47Jan 30, 2026Updated 2 weeks ago
- ☆22Mar 6, 2023Updated 2 years ago
- ATAC-seq Quality Control☆25Nov 5, 2025Updated 3 months ago
- ☆27Jun 5, 2025Updated 8 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Sep 3, 2025Updated 5 months ago
- collected resource for scRNA-seq analysis☆67Jul 19, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- Code, source data, examples, and audio excerpts for Flow: Expressive Rhythm in the Rapping Voice☆10Feb 13, 2020Updated 6 years ago
- Immunology-related bioinformatics data and tools☆76Apr 30, 2024Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Jul 26, 2018Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Jun 15, 2018Updated 7 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Course Website☆289Updated this week
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- Carpentries lesson materials for the ROAR (Robust and Open Analysis in R) workshop☆16Aug 25, 2023Updated 2 years ago
- Open-Source Software for Omic Data Analysis and Visualization☆40Feb 3, 2026Updated last week
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆154Jan 6, 2021Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 3 weeks ago
- R package to access DoRothEA's regulons☆155Feb 24, 2024Updated last year
- ☆10Jan 20, 2023Updated 3 years ago
- ☆10Mar 24, 2025Updated 10 months ago
- ☆11Apr 5, 2021Updated 4 years ago