Alternatives and similar repositories for Cancer_notes

Users that are interested in Cancer_notes are comparing it to the libraries listed below

• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 5 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆73Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆126Updated last year
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆85Updated last month
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆150Updated last year
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated 2 months ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆95Updated 6 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆91Updated 2 years ago
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆181Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆92Updated 7 months ago
• PierreBSC / Viral-Track
  ☆62Updated 5 years ago
• mhorlbeck / ScreenProcessing
  ☆65Updated 2 years ago
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆150Updated last year
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆102Updated 2 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆92Updated last week
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• liulab-dfci / RIMA_pipeline
  ☆86Updated 2 weeks ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆51Updated 7 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆89Updated 7 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆108Updated 2 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆77Updated 6 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated 2 years ago
• rpolicastro / scProportionTest
  ☆71Updated 2 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆104Updated 3 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆99Updated 9 years ago