mdozmorov / Cancer_notesLinks
A continually expanding collection of cancer genomics notes and data
☆106Updated 2 months ago
Alternatives and similar repositories for Cancer_notes
Users that are interested in Cancer_notes are comparing it to the libraries listed below
Sorting:
- Immunology-related bioinformatics data and tools☆74Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆112Updated 2 weeks ago
- published papers with a lot of data☆73Updated 3 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ☆57Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- ☆64Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆89Updated last year
- ☆62Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- ☆68Updated last year
- Tools for single-cell data processing☆125Updated last year
- ☆82Updated last year
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 4 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆102Updated 2 years ago
- My youtube programming scripts☆54Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- An R interface to enrichR☆92Updated 5 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆138Updated 10 months ago