mdozmorov / Cancer_notesLinks
A continually expanding collection of cancer genomics notes and data
☆111Updated 2 months ago
Alternatives and similar repositories for Cancer_notes
Users that are interested in Cancer_notes are comparing it to the libraries listed below
Sorting:
- published papers with a lot of data☆74Updated 8 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆117Updated 5 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Updated last year
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆183Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 4 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- Tools for single-cell data processing☆130Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆62Updated 5 years ago
- R package to access DoRothEA's regulons☆152Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆98Updated 4 years ago
- ☆63Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆154Updated last month
- My youtube programming scripts☆59Updated 11 months ago
- An R interface to enrichR☆93Updated 10 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆104Updated 3 years ago
- Simplify functional enrichment results☆121Updated last year
- ☆89Updated 3 months ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Updated 3 years ago
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Updated 5 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆33Updated 5 years ago