Alternatives and similar repositories for Cancer_notes

Users that are interested in Cancer_notes are comparing it to the libraries listed below

• crazyhottommy / papers_with_data_to_mine
  published papers with a lot of data
  ☆74Updated 9 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆119Updated 3 years ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆76Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆86Updated 2 weeks ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆154Updated last year
• PierreBSC / Viral-Track
  ☆63Updated 5 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• mhorlbeck / ScreenProcessing
  ☆69Updated 2 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆99Updated 4 years ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆104Updated last month
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆119Updated 6 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆131Updated last year
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆98Updated 6 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆94Updated 2 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆100Updated 9 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆94Updated 11 months ago
• liulab-dfci / MAGeCK
  Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…
  ☆34Updated 5 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆140Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆90Updated 5 months ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆54Updated 7 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• tuonglab / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package
  ☆123Updated last week
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆156Updated 3 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 5 years ago
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆161Updated 2 weeks ago