mdozmorov / Cancer_notesLinks
A continually expanding collection of cancer genomics notes and data
☆108Updated last week
Alternatives and similar repositories for Cancer_notes
Users that are interested in Cancer_notes are comparing it to the libraries listed below
Sorting:
- Immunology-related bioinformatics data and tools☆75Updated last year
- published papers with a lot of data☆74Updated 6 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆84Updated 2 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- R package to access DoRothEA's regulons☆151Updated last year
- My youtube programming scripts☆58Updated 9 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆97Updated 3 years ago
- ☆62Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated 3 weeks ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- ☆67Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆152Updated last year
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last month
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆98Updated last year
- ☆73Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year