mdozmorov / Cancer_notes
A continually expanding collection of cancer genomics notes and data
☆103Updated last week
Alternatives and similar repositories for Cancer_notes:
Users that are interested in Cancer_notes are comparing it to the libraries listed below
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆81Updated last year
- R package to access DoRothEA's regulons☆144Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- ☆62Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆93Updated 7 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆64Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆125Updated 6 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- A docker image for single-cell analysis☆86Updated 3 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Immunology-related bioinformatics data and tools☆72Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆173Updated 9 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆73Updated 3 years ago
- An R interface to enrichR☆92Updated 3 months ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆82Updated last month
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆199Updated 7 months ago
- published papers with a lot of data☆70Updated last month
- ☆57Updated 4 years ago
- Tools for single-cell data processing☆124Updated 11 months ago
- Basic workflow for ATAC-seq analysis☆77Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆90Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year