Sun-lab / scRNAseq_pipelinesLinks
pipelines to process scRNA-seq data
☆12Updated 4 years ago
Alternatives and similar repositories for scRNAseq_pipelines
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
Sorting:
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆14Updated 6 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆12Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- ☆16Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Scripts to install as a Bioconda package for making workflows☆17Updated last year
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- ☆17Updated 2 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 7 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago