pipelines to process scRNA-seq data
☆12Jan 11, 2021Updated 5 years ago
Alternatives and similar repositories for scRNAseq_pipelines
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- A collection of personal templates for RMarkdown☆39Nov 9, 2023Updated 2 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 3 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the Recount project☆12Dec 13, 2024Updated last year
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 3 months ago
- Code used to analyze datasets and generate figures from Williams et al., 2021☆16Jun 29, 2021Updated 5 years ago
- A tool to perform comprehensive analysis of high-dimensional radiomic datasets☆14Jan 28, 2022Updated 4 years ago
- Data visualization tools for brain tumour datasets☆15Sep 13, 2021Updated 5 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆29Mar 26, 2026Updated 6 months ago
- Rapid RNA-seq pipeline using AWS lambda functions for alignment☆13Mar 22, 2019Updated 7 years ago
- The R Bioconductor package for scMAGeCK.☆14Jul 10, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 9 months ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆54Jan 16, 2020Updated 6 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Measure Memory and CPU Usage of R Code☆22Jun 21, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated 2 years ago
- Makes plotting flow cytometry data easy and pretty. This package reads flowFrame objects and plots them in beautiful scatter plots using…☆17Mar 2, 2015Updated 11 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Analysis code for the TAP-seq manuscript.☆12Jun 25, 2021Updated 5 years ago
- ☆13Sep 30, 2023Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆14Mar 31, 2020Updated 6 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year