Sun-lab / scRNAseq_pipelines
pipelines to process scRNA-seq data
☆11Updated 4 years ago
Alternatives and similar repositories for scRNAseq_pipelines:
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆14Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆22Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- SCASA: Single cell transcript quantification tool☆19Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 2 months ago
- ☆20Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 6 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated last week
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆11Updated 5 years ago
- scover☆22Updated last year