Sun-lab / scRNAseq_pipelines
pipelines to process scRNA-seq data
☆11Updated 4 years ago
Alternatives and similar repositories for scRNAseq_pipelines:
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
- ☆14Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆12Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 10 months ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- ☆15Updated 2 years ago
- ☆17Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- ☆23Updated 2 years ago
- ☆22Updated 11 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Code for EpiMap data browser☆14Updated 11 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- scover☆23Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago