Alternatives and similar repositories for scRNAseq_pipelines:

Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below

• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 3 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• dfci / pancanmet_analysis
  Software and analysis of metabolism studies across multiple cancer types
  ☆9Updated 7 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 4 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 7 months ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago
• satijalab / azimuth-references
  ☆20Updated 3 months ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• single-cell-genetics / singlecell_endodiff_paper
  Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
  ☆15Updated 7 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 5 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• neurogenomics / reanalysis_Mathys_2019
  A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…
  ☆14Updated last year
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 2 years ago
• urrutiag / destin
  Toolkit for single-cell analysis of chromatin accessibility
  ☆12Updated 4 years ago
• jw156605 / SingleSplice
  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…
  ☆21Updated 8 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 5 years ago