Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
☆12May 31, 2024Updated 2 years ago
Alternatives and similar repositories for scImmuCC
Users that are interested in scImmuCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- A quick, free tool for single-cell annotation using large language models☆13Updated this week
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Spatial Transcriptome Image and Expression integration enables single cell level spatial data analysis☆14Sep 7, 2024Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Code for the TAURUS study☆13Oct 24, 2024Updated 2 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- ☆10Nov 5, 2023Updated 3 years ago
- ☆13Jan 17, 2023Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Notebooks for reproducing figures in the Spectra paper☆13Jun 7, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Jan 16, 2026Updated 9 months ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 7 months ago
- Code used to analyze datasets and generate figures from Williams et al., 2021☆16Jun 29, 2021Updated 5 years ago
- ☆13Oct 1, 2025Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 11 months ago
- Local Spatial Gradient Inference☆12Jul 28, 2025Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and c…☆11Nov 21, 2022Updated 3 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆40Aug 2, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell type-specific SVG detection☆10Jan 28, 2026Updated 9 months ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated 2 weeks ago
- My extensions for Seurat package☆11Jun 26, 2020Updated 6 years ago
- Evaluating spatially variable gene detection methods for spatial transcriptomics data☆11Jun 8, 2026Updated 4 months ago
- UCASpatial: Ultra-precision deconvolution of spatial transcriptomics data☆12Sep 8, 2026Updated last month
- ☆35Jan 26, 2022Updated 4 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- ☆10Sep 2, 2024Updated 2 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 3 years ago
- Temporal Cell-Cell Interaction Analysis in Single-Cell RNA-seq Data☆10Nov 27, 2024Updated last year
- scID☆14Oct 21, 2021Updated 5 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago