griffithlab / igvnavLinks
☆15Updated 7 years ago
Alternatives and similar repositories for igvnav
Users that are interested in igvnav are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- ☆11Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 3 months ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago