griffithlab / igvnav
☆15Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for igvnav
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 3 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Codes and Data for FFPEsig manuscript☆15Updated 9 months ago
- Chromatin segmentation in R☆19Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆22Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆21Updated 2 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- DriverPower☆26Updated 4 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆34Updated 7 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated last year