griffithlab / igvnavLinks
☆15Updated 7 years ago
Alternatives and similar repositories for igvnav
Users that are interested in igvnav are comparing it to the libraries listed below
Sorting:
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆11Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Allele frequency filter app☆14Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year