griffithlab / igvnavLinks
☆15Updated 8 years ago
Alternatives and similar repositories for igvnav
Users that are interested in igvnav are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- Mapped QC analysis program☆43Updated 7 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated 3 weeks ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆41Updated 3 years ago
- ☆11Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago