Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
Code repository for the Tumor Immune Cell Atlas (TICA) project
☆61Updated 3 years ago
Alternatives and similar repositories for Tumor-Immune-Cell-Atlas:
Users that are interested in Tumor-Immune-Cell-Atlas are comparing it to the libraries listed below
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- R package for Pathway RespOnsive GENe activity inference☆104Updated 2 years ago
- ☆60Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 8 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- ☆63Updated 10 months ago
- R package for semi-supervised single-cell data integration☆81Updated last month
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆76Updated last year
- ☆46Updated 2 years ago
- ☆50Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last week
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 8 months ago
- ☆62Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- ☆60Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆71Updated 3 weeks ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆67Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated 2 months ago