Code repository for the Tumor Immune Cell Atlas (TICA) project
☆63Mar 31, 2022Updated 3 years ago
Alternatives and similar repositories for Tumor-Immune-Cell-Atlas
Users that are interested in Tumor-Immune-Cell-Atlas are comparing it to the libraries listed below
Sorting:
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 10 months ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- ☆21Dec 23, 2024Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated last month
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆127Sep 24, 2024Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- ☆43Jan 9, 2021Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆524Jan 5, 2026Updated 2 months ago
- ☆12Jan 31, 2023Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Spatial transcriptomics of heart tissue☆107Oct 7, 2023Updated 2 years ago
- A toolkit for single-cell immune profiling☆364Feb 28, 2026Updated last week
- ☆21Mar 22, 2023Updated 2 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 4 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆422Sep 4, 2025Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆88Jun 7, 2022Updated 3 years ago
- mgatk: mitochondrial genome analysis toolkit☆111Jan 20, 2025Updated last year
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- ☆13Dec 15, 2021Updated 4 years ago
- ☆13Nov 2, 2017Updated 8 years ago
- ☆13Jun 18, 2018Updated 7 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 2 years ago
- ☆23Mar 29, 2023Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- ☆37Sep 20, 2022Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆76Nov 2, 2025Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago