Alternatives and similar repositories for scRNA

Users that are interested in scRNA are comparing it to the libraries listed below

• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆36Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆35Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆14Updated 4 years ago
• gxiaolab / scAllele
  ☆34Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆35Updated 5 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆80Updated last year
• youqiongye / CRC_scRNAseq
  ☆46Updated 3 years ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• horsedayday / eQTLsingle
  ☆15Updated 2 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆41Updated last year
• molgenis / scRNA-seq
  ☆18Updated last year
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆14Updated 3 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• quadbio / RNAseq_tutorial
  ☆28Updated 8 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago