stianlagstad / chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
☆37Updated last year
Alternatives and similar repositories for chimeraviz
Users that are interested in chimeraviz are comparing it to the libraries listed below
Sorting:
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- DriverPower☆26Updated 3 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- Third-generation fusion gene detection☆14Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆46Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Assign gene names to regions in a BED file☆24Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago