stianlagstad / chimeravizLinks
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
☆38Updated last year
Alternatives and similar repositories for chimeraviz
Users that are interested in chimeraviz are comparing it to the libraries listed below
Sorting:
- Mapped QC analysis program☆44Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- ☆25Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Genomic Association Tester☆32Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated last week
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 3 months ago
- BigWig and BAM utilities☆97Updated last year
- A software for calculating telomere length☆71Updated 6 years ago
- R package for DNA methylation analysis☆19Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆38Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Third-generation fusion gene detection☆14Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 4 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago