stianlagstad / chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
☆37Updated last year
Alternatives and similar repositories for chimeraviz:
Users that are interested in chimeraviz are comparing it to the libraries listed below
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 4 months ago
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- ☆32Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- ☆23Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- ☆13Updated 7 years ago
- Version II of Mandalorion☆32Updated 5 years ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- Third-generation fusion gene detection☆13Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- R package wrapping bedtools☆38Updated 4 months ago