stianlagstad / chimeravizLinks
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
☆38Updated last year
Alternatives and similar repositories for chimeraviz
Users that are interested in chimeraviz are comparing it to the libraries listed below
Sorting:
- Mapped QC analysis program☆44Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆38Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- ☆26Updated last year
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- Third-generation fusion gene detection☆13Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆55Updated last week
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- DriverPower☆26Updated 10 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 7 months ago