Townsend-Lab-Yale / cancereffectsizeRLinks
cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
☆18Updated 2 weeks ago
Alternatives and similar repositories for cancereffectsizeR
Users that are interested in cancereffectsizeR are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- GWAS gold standards repository☆37Updated last year
- ☆47Updated 6 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 3 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 5 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 7 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆28Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆24Updated 2 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- ☆12Updated 5 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago