Townsend-Lab-Yale / cancereffectsizeR
cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
☆17Updated 2 months ago
Alternatives and similar repositories for cancereffectsizeR:
Users that are interested in cancereffectsizeR are comparing it to the libraries listed below
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆19Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆45Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆20Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆11Updated 5 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆24Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 8 months ago
- ☆15Updated 7 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago