cancer-evolution / SPIAT
Spatial Image Analysis of Tissues
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SPIAT
- An R/Bioconductor package to identify higher-order molecular phenotypes☆12Updated 9 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆21Updated this week
- ☆16Updated 2 weeks ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 2 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆21Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆18Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 4 months ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆17Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆19Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- A Tidy Framework to Hack Gene Expression Signatures☆19Updated last year
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 9 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆27Updated 3 weeks ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- An R package for visualising cell-cell interactions☆39Updated 2 months ago
- ☆19Updated this week
- ☆47Updated last year