Spatial Image Analysis of Tissues
☆15Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- ☆14Aug 3, 2022Updated 3 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- ☆25Jan 31, 2026Updated last month
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 3 years ago
- ☆22Aug 25, 2022Updated 3 years ago
- Cell type pipes for R☆52Jan 27, 2024Updated 2 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Jul 15, 2022Updated 3 years ago
- Various utility functions for Seurat v5 single-cell analysis☆62Feb 20, 2026Updated last week
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Apr 21, 2025Updated 10 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 3 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 9 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- ☆26May 16, 2025Updated 9 months ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- ☆27Oct 23, 2025Updated 4 months ago
- Hierarchical classification of cells☆28Aug 2, 2024Updated last year
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆27Jan 27, 2021Updated 5 years ago
- ☆14Jul 1, 2025Updated 8 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆87Jun 7, 2022Updated 3 years ago
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- A package for the analysis of Imaging Mass Cytometry data☆14Jan 21, 2026Updated last month
- Compile RStudio for aarch64 Ubuntu 20.04 on Android☆14Mar 23, 2024Updated last year
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Mar 3, 2017Updated 9 years ago
- ☆13Jul 29, 2022Updated 3 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- set of functions for genomics data analysis☆10Apr 22, 2022Updated 3 years ago
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 7 years ago
- ☆11Feb 24, 2026Updated last week
- R tools for Agilent electrophoresis data☆47Jul 21, 2023Updated 2 years ago
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 8 months ago
- computational training at Fred Hutch☆12Jun 11, 2021Updated 4 years ago
- Python-based reports for Postgres including a data dictionary generator☆16Nov 13, 2015Updated 10 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆10Feb 13, 2025Updated last year