cancer-evolution / SPIATLinks
Spatial Image Analysis of Tissues
☆15Updated 3 years ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below
Sorting:
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated last week
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Updated 2 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- ☆43Updated 5 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 5 months ago
- Single-cell Case Control Analysis☆52Updated last week
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆26Updated 4 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago
- scID☆14Updated 4 years ago
- Network construction Algorithm☆22Updated last year
- sharing interactive single cell gene expression visualizations from Seurat☆11Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- ☆25Updated 3 years ago