Spatial Image Analysis of Tissues
☆15Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for SPIAT
Users that are interested in SPIAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- a library for massive analyses of internal voids in biomolecules and ligand transport through them☆10Mar 10, 2026Updated last month
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Apr 21, 2025Updated 11 months ago
- ☆28Jan 31, 2026Updated 2 months ago
- ☆10Oct 6, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 4 months ago
- ☆14Aug 3, 2022Updated 3 years ago
- Create analysis reports from inForm data.☆15Nov 9, 2023Updated 2 years ago
- A mobile QML app for interfacing with the Galaxy API☆14Dec 7, 2015Updated 10 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- CODEX data processing code☆12Jul 1, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Cell type pipes for R☆53Jan 27, 2024Updated 2 years ago
- Helper functions for working with inForm data.☆22May 3, 2022Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 9 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24May 19, 2025Updated 10 months ago
- ☆26May 16, 2025Updated 10 months ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Mar 26, 2026Updated 2 weeks ago
- ☆27Oct 23, 2025Updated 5 months ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 5 months ago
- A flexible parser generator producing output from object-oriented hierarchical context-free grammar specifications.☆12Nov 16, 2021Updated 4 years ago
- Hierarchical classification of cells☆28Aug 2, 2024Updated last year
- Various utility functions for Seurat v5 single-cell analysis☆64Apr 3, 2026Updated last week
- ☆18Apr 5, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Ressources for Boinformatics Trainings☆13Nov 20, 2023Updated 2 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆28Jan 27, 2021Updated 5 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago