Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
☆14Nov 13, 2025Updated 4 months ago
Alternatives and similar repositories for SPONGE
Users that are interested in SPONGE are comparing it to the libraries listed below
Sorting:
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- Pipeline for testing drug response prediction models in a statistically and biologically sound way.☆24Jan 22, 2026Updated last month
- DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.☆32Mar 9, 2026Updated last week
- ☆17Jan 9, 2023Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- Exploring Isoform-specific interactions☆12Sep 16, 2025Updated 6 months ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆46Oct 29, 2018Updated 7 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 5 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated 10 months ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- ☆19Mar 11, 2024Updated 2 years ago
- ☆18Sep 28, 2015Updated 10 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆22Jul 10, 2024Updated last year
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- ☆11May 26, 2023Updated 2 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- ☆14Mar 22, 2018Updated 7 years ago
- ☆11Apr 17, 2025Updated 11 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- singleCellNet in Python☆15Feb 25, 2026Updated 3 weeks ago
- ABS geographic data structures☆11Dec 6, 2023Updated 2 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 5 months ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 4 months ago
- A map visualization utility☆14Sep 4, 2020Updated 5 years ago
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last week
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell☆20Aug 27, 2021Updated 4 years ago
- A Python tool to transfer saved/favorited items from FreshRSS to Karakeep with tagging and filtering capabilities.☆26Jan 4, 2026Updated 2 months ago
- Clinical data for the TCGA PanCancer Atlas☆17Jul 12, 2019Updated 6 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- EBI cancer workshop course materials☆22May 9, 2022Updated 3 years ago