ucdavis-bioinformatics-training / 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
☆17Updated 5 years ago
Alternatives and similar repositories for 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF:
Users that are interested in 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF are comparing it to the libraries listed below
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- ☆29Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆40Updated 7 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- ☆41Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 9 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆47Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago