ucdavis-bioinformatics-training / 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSFLinks
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
☆17Updated 6 years ago
Alternatives and similar repositories for 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
Users that are interested in 2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF are comparing it to the libraries listed below
Sorting:
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- ☆29Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆56Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- ☆47Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- ☆26Updated 8 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq data☆41Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- R package to visualize scRNA sequencing data.☆20Updated 4 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- ☆41Updated 7 years ago
- ☆25Updated 5 months ago