mdozmorov / TCGAsurvival
Scripts to analyze TCGA data
☆114Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for TCGAsurvival
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆88Updated last month
- A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…☆77Updated 3 weeks ago
- Cell types enrichment analysis☆182Updated 5 months ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆121Updated 4 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆16Updated 5 years ago
- ☆139Updated 6 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- ☆100Updated last year
- Multi-Omics integration and VIsualization in Cancer Subtyping☆137Updated 3 years ago
- TCGA-Assembler 2☆74Updated 6 years ago
- Clone of the Bioconductor repository for the SingleR package.☆176Updated last week
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆18Updated 6 months ago
- ☆68Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆79Updated this week
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆106Updated last month
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆24Updated 4 years ago
- plots function for array☆88Updated 4 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆183Updated 7 months ago
- Hypoxia associated molecular feature analysis☆35Updated 4 years ago
- Easily download publicly available GWAS summary statistics.☆72Updated 11 months ago
- my notes for scATACseq analysis☆116Updated 6 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆143Updated 3 years ago
- Code for biostar tutorials - mostly R and Perl☆49Updated 3 months ago
- Interactively analyze single cell genomic data☆178Updated last week
- ☆91Updated 5 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- ☆207Updated 4 months ago
- ☆69Updated 3 years ago