mdozmorov / TCGAsurvivalLinks
Scripts to analyze TCGA data
☆121Updated last year
Alternatives and similar repositories for TCGAsurvival
Users that are interested in TCGAsurvival are comparing it to the libraries listed below
Sorting:
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆94Updated 8 months ago
- Cell types enrichment analysis☆198Updated last year
- ☆141Updated 7 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆114Updated 9 months ago
- A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…☆109Updated 3 months ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆122Updated 11 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆16Updated 5 years ago
- TCGA-Assembler 2☆76Updated 7 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Mollecular Functional Portraits☆41Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆111Updated 2 weeks ago
- ☆68Updated 2 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆163Updated last week
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- my notes for scATACseq analysis☆128Updated last year
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆204Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆191Updated 3 weeks ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆86Updated 7 months ago
- ☆81Updated last year
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆149Updated 4 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- ☆45Updated 5 years ago
- ☆109Updated 2 years ago
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆89Updated 4 years ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Personal notes about work- and coding-related topics☆20Updated 2 years ago