Predicting oncogenic potential of gene fusions
☆12Feb 13, 2016Updated 10 years ago
Alternatives and similar repositories for oncofuse
Users that are interested in oncofuse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- Gene Fusion Visualiser☆53Jan 15, 2023Updated 3 years ago
- ☆15Jan 19, 2018Updated 8 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43May 11, 2017Updated 9 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last month
- ☆16May 8, 2023Updated 3 years ago
- use the noise☆14Apr 15, 2020Updated 6 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 3 years ago
- Curated list of resources for variant prioritization☆16Nov 18, 2025Updated 10 months ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Nov 22, 2022Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated 2 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- ☆12Jul 13, 2018Updated 8 years ago
- extract SV signal from a BAM☆10Jul 26, 2018Updated 8 years ago
- ☆18Sep 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 4, 2019Updated 6 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Battenberg R package for subclonal copynumber estimation☆101May 11, 2026Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆29Dec 5, 2019Updated 6 years ago
- ☆15Sep 21, 2021Updated 5 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 4 months ago
- See the main fork of this repository here >>>☆39Updated this week
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML☆16Updated this week
- Mapped QC analysis program☆44May 16, 2018Updated 8 years ago
- ☆10Jan 20, 2023Updated 3 years ago