Lafond-LapalmeJ / MCSC_DecontaminationView external linksLinks
Scripts and documentations on the MCSC decontamination method
☆10Jun 13, 2023Updated 2 years ago
Alternatives and similar repositories for MCSC_Decontamination
Users that are interested in MCSC_Decontamination are comparing it to the libraries listed below
Sorting:
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 8 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- GATB Minia assembly pipeline☆31Feb 2, 2023Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated last month
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13May 16, 2016Updated 9 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 4 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Dec 11, 2017Updated 8 years ago
- ☆18Feb 24, 2017Updated 8 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Nov 21, 2025Updated 2 months ago
- ☆16Jul 16, 2016Updated 9 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Feb 11, 2022Updated 4 years ago
- ☆23Nov 9, 2025Updated 3 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48May 18, 2017Updated 8 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆23Feb 12, 2020Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21May 9, 2023Updated 2 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 10 months ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 6 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- ☆24Aug 9, 2017Updated 8 years ago
- Error correction for Illumina RNA-seq reads☆67Jan 4, 2026Updated last month
- ☆26Oct 31, 2019Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Dec 14, 2023Updated 2 years ago