Scripts and documentations on the MCSC decontamination method
☆10Jun 13, 2023Updated 3 years ago
Alternatives and similar repositories for MCSC_Decontamination
Users that are interested in MCSC_Decontamination are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 7 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13May 16, 2016Updated 10 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- A Qiime plugin for MICOM.☆10Jul 21, 2026Updated 3 weeks ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Mar 22, 2021Updated 5 years ago
- GATB Minia assembly pipeline☆32Feb 2, 2023Updated 3 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆37Dec 27, 2023Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆80Feb 11, 2022Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Dec 1, 2022Updated 3 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆54Apr 1, 2026Updated 4 months ago
- ☆13Aug 13, 2024Updated 2 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 2 months ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Physalia workshop on Generalized Linear Models by Bert van der Veen☆16Jun 1, 2026Updated 2 months ago
- ☆20Nov 17, 2025Updated 9 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- collection of bioinformatic scripts☆33May 3, 2024Updated 2 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Aug 9, 2026Updated last week
- ☆24May 1, 2026Updated 3 months ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- ☆16Jul 16, 2016Updated 10 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 7 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Repository with NGSchool2022 materials☆14Sep 19, 2022Updated 3 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- User input masking library ported to Xamarin.IOS☆11Feb 11, 2023Updated 3 years ago