GATB / bloocooLinks
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.
☆12Updated 8 years ago
Alternatives and similar repositories for bloocoo
Users that are interested in bloocoo are comparing it to the libraries listed below
Sorting:
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Scalable high-throughput short-read open reading frame prediction☆12Updated 8 years ago
- ☆15Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- Read contamination removal☆25Updated last year
- transposable element typing pipeline☆19Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆20Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆24Updated last week
- ☆15Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- ☆20Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Updated 2 years ago
- Reference genome quality scores☆21Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- Variant call verification☆16Updated 7 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Infer the age of ancestral nodes in a tree sequence.☆24Updated 3 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago