thegenemyers / DASCRUBBER
Alignment-based Scrubbing pipeline
☆20Updated 10 months ago
Alternatives and similar repositories for DASCRUBBER:
Users that are interested in DASCRUBBER are comparing it to the libraries listed below
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆31Updated 4 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- ☆48Updated 6 months ago
- ☆34Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Miscellaneous scripts for applications of PacBio systems☆25Updated 2 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆32Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- ☆33Updated 9 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago