pb-jlandolin / PacbioToSRA
Take a list of Pacbio files (.fofn) and creates a spreadsheet for data submission to the sequuence read archive (SRA)
☆13Updated 8 years ago
Alternatives and similar repositories for PacbioToSRA:
Users that are interested in PacbioToSRA are comparing it to the libraries listed below
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆56Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Graph based multi genome aligner☆46Updated 3 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- Code for nanopore paper☆33Updated 9 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- ☆28Updated last year
- ☆17Updated 8 years ago
- genomic alignment similarity search tool☆19Updated 7 months ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- BESST - scaffolder for genomic assemblies☆57Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- GATB Minia assembly pipeline☆30Updated last year
- Find Unique genomic Regions☆29Updated last week
- Miscellaneous scripts for applications of PacBio systems☆25Updated 2 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago