shendurelab / MetaPhase
The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)
☆17Updated 6 years ago
Alternatives and similar repositories for MetaPhase
Users that are interested in MetaPhase are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Find Unique genomic Regions☆29Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆16Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- ☆12Updated 2 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 3 weeks ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Hitting associations with k-mers☆45Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 6 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago