caraweisman / abSENSELinks
Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.968420v1)
☆18Updated last year
Alternatives and similar repositories for abSENSE
Users that are interested in abSENSE are comparing it to the libraries listed below
Sorting:
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ☆24Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- Reference genome quality scores☆21Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- ☆26Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- ☆29Updated 3 years ago
- transposable element typing pipeline☆19Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- ☆43Updated last year
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- PAGAN2 multiple sequence aligner☆12Updated last year