caraweisman / abSENSELinks
Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.968420v1)
☆18Updated last year
Alternatives and similar repositories for abSENSE
Users that are interested in abSENSE are comparing it to the libraries listed below
Sorting:
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- ☆24Updated 7 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Reference genome quality scores☆21Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Updated 4 years ago
- Find Unique genomic Regions☆32Updated last month
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 weeks ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated 11 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- PAGAN2 multiple sequence aligner☆12Updated last year
- Convert genbank files to a swath of other formats☆23Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago