sbooeshaghi / single-cell-vocabulary
☆26Updated last year
Alternatives and similar repositories for single-cell-vocabulary:
Users that are interested in single-cell-vocabulary are comparing it to the libraries listed below
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 2 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 9 months ago
- My youtube programming scripts☆51Updated last month
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆86Updated 6 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆43Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆118Updated this week
- An R interface to the MEME Suite☆49Updated 4 months ago
- ☆58Updated 9 months ago
- RNAseq pipeline based on snakemake☆25Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆47Updated 3 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated 3 weeks ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆99Updated this week
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆79Updated 3 weeks ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆57Updated last week
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆51Updated 3 weeks ago
- 🧬 Gene analysis toolkit based on R☆55Updated last month
- SingleCell Nanopore sequencing data analysis☆55Updated 2 months ago
- Snakemake pipeline for running MAJIQ☆19Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated 2 weeks ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆67Updated this week
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 11 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 8 months ago