sbooeshaghi / single-cell-vocabularyLinks
☆25Updated last year
Alternatives and similar repositories for single-cell-vocabulary
Users that are interested in single-cell-vocabulary are comparing it to the libraries listed below
Sorting:
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- A rust framework to make using alevin-fry even simpler☆61Updated 9 months ago
- An R interface to the MEME Suite☆54Updated 3 weeks ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Updated 2 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 10 months ago
- My youtube programming scripts☆59Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Explore and download data from the recount3 project☆37Updated 4 months ago
- R package containing useful functions for mutational signature analysis☆87Updated this week
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆83Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated last week
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆70Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- Ultraperformant reimplementation of SICER☆58Updated last month
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆83Updated 7 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- ☆44Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago