sbooeshaghi / single-cell-vocabulary
☆25Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for single-cell-vocabulary
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated 6 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆28Updated 11 months ago
- Publication quality NGS track plotting☆108Updated 2 years ago
- ☆56Updated 6 months ago
- My youtube programming scripts☆38Updated last month
- An R interface to the MEME Suite☆46Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Tutorial Website☆53Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆52Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 8 months ago
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Notes on ChIP-seq and other-seq-related tools☆22Updated 4 months ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 4 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆41Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- Snakemake pipeline for running MAJIQ☆19Updated 11 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- A list of alternative splicing analysis resources☆37Updated last week