SimoneTiberi / BANDITSLinks
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
☆18Updated last month
Alternatives and similar repositories for BANDITS
Users that are interested in BANDITS are comparing it to the libraries listed below
Sorting:
- Comprehensive Human Expressed SequenceS☆18Updated 4 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆34Updated this week
- interactive plots for differential expression analysis☆34Updated 4 months ago
- HOT regions paper☆11Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last month
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 10 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 7 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆17Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- iread☆25Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆29Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated 10 months ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 11 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago