SimoneTiberi / BANDITSLinks
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
☆18Updated last week
Alternatives and similar repositories for BANDITS
Users that are interested in BANDITS are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆26Updated 4 months ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- ☆17Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- ☆29Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- iread☆25Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- ☆12Updated last year
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 9 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated this week
- HOT regions paper☆11Updated 6 years ago