An R package to process and analyze transcriptomic data
☆19Jun 18, 2025Updated last year
Alternatives and similar repositories for txtools
Users that are interested in txtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- ☆11Aug 21, 2024Updated last year
- Base-conversion Sequencing Aligner☆14Nov 8, 2025Updated 9 months ago
- ☆12Apr 28, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- bioinformatic pipeline for GLORI☆25Mar 30, 2026Updated 4 months ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆31Mar 23, 2026Updated 4 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆15Jul 16, 2025Updated last year
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 4 months ago
- MuRaL is a deep learning framework for building base-resolution mutation rate maps.☆21May 19, 2026Updated 2 months ago
- ☆14Mar 18, 2016Updated 10 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19May 1, 2026Updated 3 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆25Apr 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆30Sep 9, 2025Updated 11 months ago
- a tool for summarizing and integrating gene-set analysis results☆17Aug 14, 2024Updated last year
- A container for the forna visualization software.☆22May 30, 2024Updated 2 years ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- Optimal cutpoints in R: determining and validating optimal cutpoints in binary classification☆92Mar 13, 2025Updated last year
- m5C mapping and site calling pipeline.☆13Jan 22, 2024Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 3 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 7 years ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- R-Ladies Los Angeles meetup presentations☆11Oct 27, 2018Updated 7 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated 2 weeks ago
- ☆11Dec 7, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10May 31, 2022Updated 4 years ago
- ☆13Updated this week
- ☆12Nov 7, 2022Updated 3 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆11Apr 5, 2026Updated 4 months ago
- ☆17Jul 13, 2024Updated 2 years ago
- ☆21Jul 16, 2024Updated 2 years ago