AngelCampos / txtoolsLinks
An R package to process and analyze transcriptomic data
☆19Updated 7 months ago
Alternatives and similar repositories for txtools
Users that are interested in txtools are comparing it to the libraries listed below
Sorting:
- RNA editing quantification in deep transcriptome data☆16Updated 6 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- ☆15Updated 3 years ago
- ☆23Updated 4 years ago
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- ☆34Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated last year
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Updated 6 years ago
- Tutorial Website☆63Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- ☆20Updated 6 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 8 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- An R interface to the MEME Suite☆54Updated 3 weeks ago
- ☆14Updated 9 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆22Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 8 months ago