Alternatives and similar repositories for txtools:

Users that are interested in txtools are comparing it to the libraries listed below

• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆38Updated 3 years ago
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆17Updated last year
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 3 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆57Updated 4 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆34Updated last week
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 3 years ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated this week
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• gexijin / shinygo
  ☆26Updated last month
• zanglab / SICER2
  ☆21Updated 2 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆26Updated 2 months ago
• JSuryatenggara / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆21Updated 6 months ago
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 3 weeks ago
• Kingsford-Group / ribomap
  ☆12Updated 9 years ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆15Updated last year
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆22Updated last year
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated last year