AngelCampos / txtools
An R package to process and analyze transcriptomic data
☆16Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for txtools
- ☆14Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- SingleCell Nanopore sequencing data analysis☆52Updated 3 weeks ago
- ☆9Updated 4 years ago
- Long read to rMATS☆31Updated last year
- ☆23Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- ☆12Updated 8 years ago
- Snakemake pipeline for running MAJIQ☆19Updated 11 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆17Updated 11 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Benchmarking long-read RNA-seq analysis tools☆25Updated 9 months ago
- RiboPlotR package for Ribo-plot☆13Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- documentation for trackViewer☆29Updated 5 years ago
- lncRNA-screen☆26Updated 7 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Documentation for vcfR☆10Updated last year
- Motif manipulation functions for R.☆25Updated last week
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago
- Statistically Significant loops from HiChIP data☆39Updated 7 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago