Kuanhao-Chao / splamLinks
✂️ Deep learning-based splice site predictor that improves spliced alignments
☆53Updated 4 months ago
Alternatives and similar repositories for splam
Users that are interested in splam are comparing it to the libraries listed below
Sorting:
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ☆39Updated last week
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- Master of Pores 2☆23Updated 7 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆76Updated this week
- for visual evaluation of read support for structural variation☆54Updated last year
- visual analysis of your VCF files☆34Updated 2 years ago
- ☆32Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆31Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- An efficient CLI to extract sequences from the SRA☆108Updated 3 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- WDL workflows for variant calling and assembly using ONT☆35Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- (WIP) best-practices workflow for rare disease☆60Updated last year
- Scoring GT/AG sites for improving spliced alignment☆45Updated last week
- ☆79Updated last month
- gatk4 RNA variant calling pipeline☆50Updated this week
- VEP Plugin to annotate high-impact five prime UTR variants☆27Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month