✂️ Deep learning-based splice site predictor that improves spliced alignments
☆59Feb 26, 2025Updated last year
Alternatives and similar repositories for splam
Users that are interested in splam are comparing it to the libraries listed below
Sorting:
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Jul 7, 2023Updated 2 years ago
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆40Dec 11, 2025Updated 2 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆85Jun 17, 2024Updated last year
- 👶🏼🍼 a RPG game modified from a unity 2D game kit☆22Sep 20, 2023Updated 2 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Repository☆10Oct 23, 2024Updated last year
- ☆39Jul 3, 2025Updated 8 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- ☆19Nov 17, 2025Updated 3 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated 2 weeks ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 3 weeks ago
- A pipeline creation tool using Snakemake☆12Updated this week
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- A local-haplotagging-based small and structural variant caller☆95Feb 27, 2026Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 7 months ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Dec 14, 2025Updated 2 months ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 3 months ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 6 months ago
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- Visualization toolkit for differential splicing events☆17Updated this week
- A structural variation pipeline for short-read sequencing☆201Updated this week
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Tandem repeat genotyping from long reads☆20Feb 24, 2026Updated last week
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- VEP Plugin to annotate high-impact five prime UTR variants☆28Aug 23, 2024Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆123Oct 9, 2025Updated 5 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆80Oct 7, 2025Updated 5 months ago