Kuanhao-Chao / splamLinks
✂️ Deep learning-based splice site predictor that improves spliced alignments
☆59Updated 10 months ago
Alternatives and similar repositories for splam
Users that are interested in splam are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Scoring GT/AG sites for improving spliced alignment☆49Updated 2 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆40Updated 6 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 4 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆37Updated 3 weeks ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆38Updated 2 years ago
- Master of Pores 2☆23Updated last year
- ☆38Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last week
- for visual evaluation of read support for structural variation☆55Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 3 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- gatk4 RNA variant calling pipeline☆58Updated this week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- A library for counting small kmer frequencies in nucleotide sequences.☆27Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆77Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Human reference genome analysis sets☆57Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆23Updated 2 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 7 months ago
- Long read to rMATS☆32Updated 2 years ago