Kuanhao-Chao / splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
☆36Updated last month
Related projects ⓘ
Alternatives and complementary repositories for splam
- ☆33Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆66Updated this week
- WDL workflows for variant calling and assembly using ONT☆28Updated this week
- Master of Pores 2☆23Updated last year
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- ☆33Updated last year
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆14Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 2 months ago
- ☆33Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆99Updated this week
- SingleCell Nanopore sequencing data analysis☆52Updated last month
- ☆21Updated 2 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆32Updated 5 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆33Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago