Kuanhao-Chao / splamLinks
✂️ Deep learning-based splice site predictor that improves spliced alignments
☆52Updated 4 months ago
Alternatives and similar repositories for splam
Users that are interested in splam are comparing it to the libraries listed below
Sorting:
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆74Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 4 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 3 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- Digenome-toolkit ver2.☆16Updated 3 years ago