Alternatives and similar repositories for splam

Users that are interested in splam are comparing it to the libraries listed below

• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 11 months ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated 7 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆67Updated 3 weeks ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆46Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• WGLab / LongReadSum
  ☆24Updated last month
• smarco / gem3-mapper
  GEM-Mapper v3
  ☆57Updated 7 months ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆54Updated 2 weeks ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆30Updated 6 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆63Updated last year
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated last week
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated last month
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆32Updated 3 weeks ago
• srbehera / DRAGEN_Analysis
  ☆35Updated last year
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆42Updated last year
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated last year
• refresh-bio / SPLASH
  ☆82Updated last month
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated 3 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 5 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 10 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆61Updated 4 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 6 months ago
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• shimlab / NanoSplicer
  ☆31Updated 10 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago